| locus | primer_a | primer_b | Tm | chromosome | alleles | estimated frequency | accession |
| ACE | CTGGAGACCACTCCCATCCTTTCT | GATGTGGCCATCACATTCGTCAGAT | 58 | 17 | 500_190 | IF | X62855 |
| APO | AAGTGCTGTAGGCCATTTAGATTAG | AGTCTTCGATGACAGCGTATACAGA | 58 | 11 | 410_100 | IF | X53550 |
| B65 | ATATCCTAAAAGGGACACCA | AAAATTTATGGCATGCGTAT | 52 | 8 | 439_99 | IF | U18396 |
| COL3A1 | ACCTGCAGCACCAGGAGGTCCTGGAGGGCC | GAGTCCTTTAGAAGGATATGCTCTG | 64 | 2 | 700_380 | LF | AC066694 |
| HS2.43 | ACTCCCCACCAGGTAATGGT | AGGGCCTTCATCCAGTTTGT | 58 | 1 | 485_185 | IF | U57005 |
| HS4.32 | GTTTATTGGGCTAACCTGGG | TGACCAGCTAACTTCTACTTTAACC | 58 | 12 | 600_290 | IF | U57006 |
| HS4.65 | TGAAGCCAATGGAAAGAGAG | ACAGGAGCATCTAAACCTTGG | 58 | 9 | 650_350 | IF | U57007 |
| HS4.75 | CAGCATTACATACAATAGTTAGGAGC | GTGATATTTGTCTTTCTGTACCTGG | 60 | 3 | 670_370 | IF | U57009 |
| PV92 | AACTGGGAAAATTTGAAGAAAAGT | TGAGTTCTCAACTCCTGTGTGTTAG | 58 | 16 | 450_130 | IF | AC009028 |
| Sb22777/Sb19.12 | TTAACATCCCTGCAACCCATC | GATTATAGTCACCCTGTTGTGC | 54 | 19 | 470_170 | IF | AF015169 |
| Sb23467/Sb19.3 | TCTAGGCCCAGATTTATGGTAACTG | AAGCACAATTGGTTATTTTCTGAC | 58 | 19 | 425_114 | IF | AF015160 |
| TPA25 | GTAAGAGTTCCGTAACAGGACAGCT | CCCCACCCTAGGAGAACTTCTCTTT | 58 | 8 | 457_134 | IF | K03021 |
| Ya5NBC102 | TCCCATTTCTCTAGACCTGCTG | CCCATAACAGGTCTTCATATTTCC | 55 | 17 | 483_194 | IF | AF118569 |
| Ya5NBC120 | GGACCACATGACTGAGTGTAAAGT | GAGGTGGCCTCTTAACCATAATTC | 55 | 17 | 518_199 | IF | AC005863 |
| Ya5NBC123 | ATCAAGTTGACACTCAGTATTCACCAC | CTAGTCTGCAGAACTGTGAGAAATGTA | 55 | 5 | 490_180 | IF | AC005739 |
| Ya5NBC132 | CTCGTGATTCACAGAAGTGTTGTAAG | CGGGGTTCATCCTTAATACATACAT | 60 | 6 | 458_228 | IF | U91328 |
| Ya5NBC135 | ATTAAGCTCATGGTAACCAGCAC | GACTCTCCTCTCTGGATTAGAAACAG | 60 | 11 | 436_117 | LF | U01102 |
| Ya5NBC147 | TAGCTGGGGGAGGTAGATAATAAAC | AAATATCACCTTATCAGTGGGACCT | 60 | 12 | 493_155 | LF | AC007656 |
| Ya5NBC148 | ACAAGATGACAGATGTAAACCCAAC | AAGGTGTTGTCAGACTAATCTATCG | 60 | 20 | 505_193 | IF | AL031659 |
| Ya5NBC150 | AAATGGAGACACAGAGGTGTAAAGA | CCCAAACTGCATATTTAAAGGGTAG | 60 | 19 | 491_169 | IF | AF135028 |
| Ya5NBC157 | CATACGTTAAATCACTCGGTACTCA | TCAGAAAAGTATACAGGTGATGTGC | 60 | 17 | 516_207 | HF | AC005281 |
| Ya5NBC159 | GAGGGTCTTTCCTAGGTTTTGTTT | ATGTCAGGTGTCCCTTATGGAGTAT | 60 | 1 | 590_178 | HF | AL031274 |
| Ya5NBC171 | TCTAGAATTACAAGTGCAAGCCATC | CTTCTCATCCCTGCTAACATAACAT | 55 | 6 | 451_130 | LF | AL035688 |
| Ya5NBC182 | GAAGGACTATGTAGTTGCAGAAGC | AACCCAGTGGAAACAGAAGATG | 60 | 7 | 563_287 | IF | AC006365 |
| Ya5NBC208 | AATACCTTGTACATCTTCACCCCTA | TCTCTCTGCTGCACAGTTTGTT | 50 | 14 | 439_110 | IF | AL132992 |
| Ya5NBC212 | CATTTGGCGCAAGTGGTATT | ATCCCAAAGAAACCCACGA | 60 | 7 | 502_190 | HF | AC002074 |
| Ya5NBC216 | GATGTGACCCTGGCTTGTAAA | CAGAGTCCCTGTGCAAAATG | 55 | 7 | 456_141 | IF | AC007245 |
| Ya5NBC221 | CAGTTTTCCATATACATGTGGGTTC | TAGTGTTAAGAGGCCCATTTTCTAC | 60 | 22 | 640_313 | IF | AC004019 |
| Ya5NBC237 | CCCATGGAGGGTCTTTCCTA | CTGGAAACCATCCTTCACAGT | 60 | 1 | 410_88 | HF | AL031274 |
| Ya5NBC239 | CAGCTGAGAACTGTCACAAATAGAA | ATCAATGACTGACTTGTGCTGAGT | 60 | 9 | 531_198 | LF | AL133284 |
| Ya5NBC241 | GGTTCCAATAGAGAGCAACAGAA | ACCTTAAGCTTTCCCCCAGA | 55 | 15 | 392_66 | IF | AC084758 |
| Ya5NBC242 | AACAAAATTCCCTTTCCTCCA | GGCAATCTGACCTTGGGTAA | 50 | 7 | 503_193 | IF | AC009517 |
| Ya5NBC27 | CTGAATACAGGTATCACTGAACAGAAC | ACAGTGTAAAGTCTAACCTACCAGAGGAT | 55 | 11 | 591_265 | IF | AC003691 |
| Ya5NBC311 | TCTTGGCAAGGAGATGTGAA | AATCACATCCGAGGGTGTCT | 60 | 5 | 584_279 | IF | AC008843 |
| Ya5NBC327 | AGGCAGGTTCAATGTTCAAA | TTGTCTTATTGTGCTGGCTAGA | 60 | 6 | 668_339 | IF | AL132799 |
| Ya5NBC333 | GGCATGCTATCATTCCCAAA | CCAAACTTCTGTTTGAGAGAATACG | 60 | 14 | 588_281 | IF | AL117356 |
| Ya5NBC335 | TGGGTACTTTGGCCTTAGAGAA | TTCACAGCATTAGAGAGAGTTGATG | 58 | 5 | 500_190 | HF | AC025767 |
| Ya5NBC345 | GCCATGAGAGTGGTCAGCAT | AGTCTCCACCATCTCTGCTGT | 60 | 3 | 391_94 | IF | AC008249 |
| Ya5NBC347 | CATGCCCATTGCTTTACGTT | TGGGGTAGATGGACTCATCC | 60 | 1 | 465_140 | IF | AL035411 |
| Ya5NBC351 | TTCCTCCCCTTTTTCCTGTT | TGTCAGTATGTAAACCCATGCT | 55 | 21 | 437_123 | IF | AP000459 |
| Ya5NBC354 | GTAGCTTGGCCTGTGCTCTT | CCTCTGGGCTGAGAAACTCTT | 65 | 7 | 466_148 | IF | AC008039 |
| Ya5NBC45 | TAGGGTAAGGAATATGTGCTGCTTTAG | GTCTCTGAACGACTATGTGAGCAG | 60 | 20 | 591_265 | IF | AL049868 |
| Ya5NBC51 | ATATTCCAGAAGTTTCCTTACATCTAGTGC | AAAGCTTTAAGTCTCCACCATCTCT | 60 | 3 | 437_140 | IF | AC008249 |
| Ya5NBC54 | GTTTATGTCAGTAGGAGTTTTCTCGTGTAG | TCATTGTATCATCTGCTGTACCTGT | 60 | 6 | 433_130 | LF | AL024507 |
| Ya5NBC61 | TGAAATAATCCAGTTGGGGAAG | GTATATCTCTACCGAGACTCAGTTTTTAGC | 55 | 4 | 493_180 | IF | AC009594 |
| Ya5NBC96 | TAGATGAGATAGAGCCATCAAACACTC | GTATTGTAACCCATAGAGCAACCAT | 60 | 7 | 509_169 | IF | AC004547 |
| Yb8NBC106 | TCACAACTGTAAAGATATGGAATCC | CTGGGTTGCATTTCATGGTA | 60 | 21 | 558_233 | IF | AF064865 |
| Yb8NBC120 | CAGTGGATCTCCATTTTACCTCTC | GGAAAGGTTTCAGGAAGAAAGTG | 60 | 22 | 532_212 | IF | AC004019 |
| Yb8NBC125 | AGCCAGAAACCCTGAACAAG | AAAGGCCCCAGAAGTATACCA | 60 | 22 | 415_97 | IF | Dj309I22 |
| Yb8NBC13 | TCTGGGTTTCTCTGGTGGAC | CTGGCAAATGCTACCCAAGT | 60 | 16 | 510_168 | LF | AC002331 |
| Yb8NBC146 | CTCTTCTCTCCAGGAAACGTC | GGAGCTCTGCCTTACACTCAA | 60 | 16 | 887_592 | IF | AC009028 |
| Yb8NBC148 | CCAGGCCTCCATCTTTGATA | TCACTTTTGGGCATGTCAAG | 60 | 14 | 537_218 | IF | AC010582 |
| Yb8NBC157 | TATGGTTCTCAGCCATCACG | ATTCTTCCCCAAAGGGAGTC | 60 | 10 | 712_423 | IF | AL121748 |
| Yb8NBC181 | CATGTACCTTAGAATTCCACTCTCA | CCCCAAAGTTTATAGTCTGTTGTCT | 55 | 3 | 487_151 | FP | AC007917 |
| Yb8NBC192 | CTGCTCTACCCTAGGCTCTTCTATC | GCTCCTCTGCTTTTATGTGTTCTAC | 55 | 7 | 423_132 | HF | AC006325 |
| Yb8NBC201 | GGAGAAAATGTAAGGTTTCTAGCAC | ACCAATGCAACTATCTACACTGACA | 60 | 7 | 476_145 | IF | AC007558 |
| Yb8NBC207 | GTAATATGAGGTGATGGGGGTTACT | GGTGAAAGAAGAACCCCTAAGTTAT | 60 | 7 | 471_154 | IR | ACOO5OO8 |
| Yb8NBC227 | AAGAAAAGGGAAGCCTGGAG | CAGTCATCACCAGCCATGAG | 60 | 17 | 881_546 | IF | AC005799 |
| Yb8NBC237 | GCCAAAATCAACTGCCAAAC | TGCTGAGGATAGAGCTATAGCAGA | 60 | 7 | 491_164 | IF | AC004613 |
| Yb8NBC243 | GAACCCCATCCATTCTCTTACA | GTGGCAAAATATTGGCGACT | 60 | 16 | 508_156 | IF | AC003003 |
| Yb8NBC405 | GCCCATCCCCTATTATAGCC | ACCAAACCCCCATGACACTA | 60 | 3 | 463_155 | IF | AC024057 |
| Yb8NBC412 | CAAAGATGGTTGTTGAGGTTGA | CCCAGCAACTTCCCCTTAAT | 60 | 7 | 500_185 | IF | AC018634 |
| Yb8NBC419 | CATCTCCTGGCAACACTGAG | ACAAAGCAAGGGTATTTACAGC | 60 | 5 | 572_241 | IF | AC025472 |
| Yb8NBC420 | AAATGCCCAAGTTTCATTGC | AACTGCCACAGCGATTCTTT | 60 | 2 | 430_103 | IF | AC008177 |
| Yb8NBC435 | TGAATGATTGGGACTGGGTA | TGGCTGGATGAACTTTCACA | 55 | 20 | 444_113 | IF | AL138808 |
| Yb8NBC437 | GGCGGTGATGGTAAAACAAC | CTTCCCCAAGGAGCCTTTTA | 60 | 13 | 498_183 | IF | AL390755 |
| Yb8NBC441 | CTCCTGGCATGTCTTCAGGT | TCTCAGCCTAGACCAATACCAA | 60 | 6 | 488_160 | IF | AL137009 |
| Yb8NBC450 | TGAAATCTATCTCGTAGGAAGGCTA | CCGCTGGTTACCAAAAGATT | 61 | 13 | 500_186 | IF | AL353738 |
| Yb8NBC461 | CCAAAGTCATTCTTCATTCTGC | GACACCCGAAAAGACTAAAGACA | 58 | 1 | 529_205 | IF | AL109944 |
| Yb8NBC463 | GCCAGTGCTTGGGTTTTAGA | CTGGCAATGAATTTCCCTTT | 56 | 13 | 543_220 | IF | AL138914 |
| Yb8NBC466 | TTGAGGCACTAGACTTACAGAATTG | CAGGAGCTGCTTTCACCTCT | 60 | 14 | 427_92 | IF | AL358337 |
| Yb8NBC479 | CATCCTGTTTCAACATCAGCA | GTTCCCAGCAGGAATCTGAG | 60 | 20 | 398_182 | IF | AL121919 |
| Yb8NBC480 | CCTCTCTCACAAACAGTGCAG | TCGCAAGACACAGGCTATCA | 65 | 13 | 457_114 | IF | AL355980 |
| Yb8NBC485 | TGTTCTTGCCAGAAAGTTTGC | CCAATCCAGGACTCGACATT | 58 | 1 | 433_95 | IF | AL133286 |
| Yb8NBC49 | GCAGTGGATTGGTTTTTCTG | GCTGAAAGAGGCATTGAAATC | 60 | 6 | 542_205 | IF | AL031904 |
| Yb8NBC5 | AAGGTCTAAGCGCAGTGGAA | TGTATGCAGGTTGCTTGCTC | 60 | 7 | 503_167 | LF | AC004027 |
| Yb8NBC505 | TGAGCCTATGACTGAGCATGA | GGGGCTCTCATCAGCATTTA | 60 | 5 | 764_427 | HF | AC026722 |
| Yb8NBC516 | GGGCTCAGGGATACTATGCTC | GCCTAGGCCTACCACTCAGA | 60 | 20 | 445_124 | IF | AL391316 |
| Yb8NBC547 | GCCCATGCTCAGTCTAAACC | GATTGGAGCCCTTGTCTACG | 60 | 5 | 413_238 | LF | AC025765 |
| Yb8NBC568 | AAACCCAACAAATGTGCTTC | GGCAACCTACACAAAGCATGT | 60 | 6 | 501_213 | IF | AL356137 |
| Yb8NBC576 | GGGAACTAACTAGTGGGCAAA | GCATGTACACTAAGGTATGCAAAAG | 55 | 6 | 475_149 | IF | AL357080 |
| Yb8NBC585 | CATTGGGTTTAACATTCGCTCT | CACGTGTGCAGCAATGTATG | 60 | 9 | 585_260 | HF | AL359077 |
| Yb8NBC589 | AGTCTTAATGGGCGCTGAGA | AGTGCCTCACCCAGTAGCAC | 60 | 6 | 472_154 | IF | AL355499 |
| Yb8NBC596 | TCCAGGGCCAAGTAGTGAAT | CTGCCCCAAATGCTTACACT | 55 | 1 | 543_203 | IF | AC027691 |
| Yb8NBC597 | TGAGGTGTTGCAGACGATGT | CGCATGCTTTAGAGAATACCC | 60 | 5 | 429_108 | IF | AC027304 |
| Yb8NBC598 | TGGGTCCTATCATCCCCTATC | CCAGAAGGCATCTCATGGTT | 60 | 19 | 691_398 | IF | AC011471 |
| Yb8NBC605 | GCCTCTAGGTGGAGCCCTTT | GCCCCATTTATGGCTGTTTA | 60 | 1 | 723_392 | IF | AL357972 |
| Yb8NBC622 | TCAAAACTTGCGGATTTTCC | TGCTGAGCTATACTGGTGCAA | 60 | 11 | 451_357 | IF | AF321237 |
| Yb8NBC636 | CCTCTGGCAAGCTGCTTAAT | TCACAGCTAGAGGAGACATGAAA | 60 | 1 | 498_169 | IF | AL512348 |
| Yb8NBC65 | ATCTCATCTCCCTGCCTCTG | GGGAGGTCTGGAGATCTGTG | 60 | 6 | 517_186 | IF | AL031228 |
| Yb8NBC77 | CGGAATGTTCTGAGGATCAAA | GGAAGCTCTGCACAACTCCTA | 55 | 12 | 547_218 | LF | AC007542 |
| Yb8NBC80 | ATTTCACAGTGCCCTGTCCT | TCCAGGCAGATGAATTGACA | 60 | 18 | 456_123 | IF | AC006249 |
| Yb8NBC93 | AAGTGAGTCCCAGGGCCTTCT | CACACAGGCACTTGTTTGGT | 60 | 20 | 601_274 | IF | AL035461 |
| Yb9NBC10 | GTTTTCCTGGTGTGCCCTAAATA | TTTACCTAACTCACAAGACCCAAAG | 60 | 4 | 524_197 | IF | AC025961 |
| Yb9NBC50 | GTTCCACAAGTACAGGAGAAAATGT | GAAGCTCTTTAGGAAACCAAATCTC | 55 | 11 | 460_138 | IF | AL109865 |
| Yc1NBC2 | TCTCTCATGAACATAGATACAAA | CGTGCATTCTTGAGATAAAT | 60 | 7 | 443_102 | IF | AC006195 |
| Yc1NBC35 | CCCATTCTCCATGCCGTGAT | TGCAAGGCATTGGGGATACA | 60 | 16 | 481_162 | IF | AC004638 |
| Yc1NBC53 | AAAGCTATCAACCATGCCAACA | GAAAATGCTATTTTGGGGAATG | 62 | 7 | 505_186 | IF | AC004848 |
| Yc1NBC63 | GGTACTCAGTAACACATCAAGA | AAGCTGGGTGGTGGGTTCAC | 60 | 6 | 502_181 | IF | AL121964 |
| Yc1RG68 | ATGGTGTCCACAAGAAACTGAG | GGAAGGCTCCATTATAGGTCTTG | 60 | 7 | 480_166 | IF | AC008039 |